PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993477.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 676aa MW: 75956.7 Da PI: 6.2818

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.5	2.9e-24	120	220	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_024993477.1 120 FCKVLTASDTSTHGGFSVLRKHANEClpgldmtQ--ATPTQELVAKDLHGVEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 210 99************************999543..445569********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_024993477.1 211 NGELRVGVRR 220 999***98 PP
2	Auxin_resp	105.9	4.6e-35	246	325	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F v+Y+Pr+ s+F++ ++k+ +a+++ ++vGmRfkm+fe+eds+err++Gt+vgv+d++p +W+ SkWrsLk XP_024993477.1 246 ASHAVSTQTRFAVYYKPRT--SQFIIGLNKYIEAVNNGFTVGMRFKMRFEGEDSPERRFTGTIVGVEDMSP-QWECSKWRSLK 325 789*************6..9*********************************************.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MENRGSTFLS PEDLLYKELW KACAGPLVDV PRDGESVFYF PQGHMEQLEA STNQELNQRI 60 PLFSLKSKIL CRVVHTQLLA EQDTDEVYAQ ITLLPEQDQS DPTSPDECLA EPVRPTVHSF 120 CKVLTASDTS THGGFSVLRK HANECLPGLD MTQATPTQEL VAKDLHGVEW RFKHIFRGQP 180 RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRR LARQHSSMPS SVISSQSMHL 240 GVLATASHAV STQTRFAVYY KPRTSQFIIG LNKYIEAVNN GFTVGMRFKM RFEGEDSPER 300 RFTGTIVGVE DMSPQWECSK WRSLKVQWDE PASIMRPERV SPWEIETFVA PIPTSLVQPV 360 APKSKRPRPH MEIPNIEPAC SSVSAVWNPS HDSVQLSCTP EGQRGDDRNS WHPKQTDNSN 420 NGCLLRTQME AGWLSSSPIK ASRNMYGDET EDRKGLSAWS VHSTYSPQES IKHTKDSIQS 480 SIDKKKSENV SSCRIFGFDL KIPPKGDITP EKATLTQSDV LFHSSMEGQV PSTLSDQRSD 540 LSKDCKEQGQ LQVSPKEVQS KQSTCARSRT KVQMQGIAVG RAVDLTVLKG YDELIDELEE 600 MFEIKGELRP RNEWEIVFTD DEGDMMLMGD DPWQEFCNMV KRILICSSQD VKKMRAGSKT 660 SIDNDVSGFS LEAGEK

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MENRGSTFLS PEDLLYKELW KACAGPLVDV PRDGESVFYF PQGHMEQLEA STNQELNQRI  60
PLFSLKSKIL CRVVHTQLLA EQDTDEVYAQ ITLLPEQDQS DPTSPDECLA EPVRPTVHSF  120
CKVLTASDTS THGGFSVLRK HANECLPGLD MTQATPTQEL VAKDLHGVEW RFKHIFRGQP  180
RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRR LARQHSSMPS SVISSQSMHL  240
GVLATASHAV STQTRFAVYY KPRTSQFIIG LNKYIEAVNN GFTVGMRFKM RFEGEDSPER  300
RFTGTIVGVE DMSPQWECSK WRSLKVQWDE PASIMRPERV SPWEIETFVA PIPTSLVQPV  360
APKSKRPRPH MEIPNIEPAC SSVSAVWNPS HDSVQLSCTP EGQRGDDRNS WHPKQTDNSN  420
NGCLLRTQME AGWLSSSPIK ASRNMYGDET EDRKGLSAWS VHSTYSPQES IKHTKDSIQS  480
SIDKKKSENV SSCRIFGFDL KIPPKGDITP EKATLTQSDV LFHSSMEGQV PSTLSDQRSD  540
LSKDCKEQGQ LQVSPKEVQS KQSTCARSRT KVQMQGIAVG RAVDLTVLKG YDELIDELEE  600
MFEIKGELRP RNEWEIVFTD DEGDMMLMGD DPWQEFCNMV KRILICSSQD VKKMRAGSKT  660
SIDNDVSGFS LEAGEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	369	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein