PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993479.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 307aa    MW: 35224.1 Da    PI: 6.7819
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-11246293246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                       +W  eE+  l  +vk++G+g+Wk+I  + +    gR+  ++k++w++
   XP_024993479.1 246 RAWGFEEENALWIGVKKYGKGNWKLILTMYPdifVGRSVVDLKDKWRN 293
                      68*********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MDIDVSGWIL EFLLRQTSVD DHTLDELIRV LPLPDHNLSL KKSLLLRKIE SDILKGTVSE  60
PVLELLETIQ ELDQKEGVVE VPETMKTAYC AVAVHCALRL LRGNITKKEK YSDVVKMIWK  120
DRALQMEKFF DMPVAASSGM EWISEELKNW MCNMKAGVWD PTSVCKNVSV MKYIKCKDVV  180
EMVRLYVVEA KEKMGPSFLE LAAEKLSGDV IKEVTDGVGK VQNEQQEGER NESSLIKGLL  240
KRRPKRAWGF EEENALWIGV KKYGKGNWKL ILTMYPDIFV GRSVVDLKDK WRNMSRYESY  300
LESKNVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.18e-11MYB_related family protein