PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993491.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family RAV
Protein Properties Length: 317aa    MW: 36644.4 Da    PI: 8.1652
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.35e-103077255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykGV    ++g W A+I+       ++r++lg+f ++ +Aa a+++a  kl+ 
  XP_024993491.1 30 KYKGVV-PQQNGNWGAQIYAN-----NQRIWLGTFKYELDAAMAYDRASIKLRS 77
                    89***6.667999****9993.....5**********99*********999985 PP
2B385.54.8e-27149245188
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k+ltpsdv+k++rlv+pkk+a  +        +g  + ++ l+++d++ r W+++++y+k+s+++v+t+GW++Fvk+++Lk++D ++F+++++
  XP_024993491.1 149 FQKELTPSDVGKLNRLVIPKKYAVGYfppvpdesEGYANDEVNLSFYDPQKRLWKFRYCYWKSSQSFVFTRGWNQFVKEKKLKAKDKITFYYHEN 243
                     99****************************9999555568899************************************************9876 PP

                     .S CS
              B3  88 .s 88 
                      +
  XP_024993491.1 244 lE 245
                     55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MEEHLDSSSG SNLTQKMNLK VMDDYGYSQK YKGVVPQQNG NWGAQIYANN QRIWLGTFKY  60
ELDAAMAYDR ASIKLRSADA PRNFSWTKLT LQEAKFQSHY SMETVLAMIK DGSYQAKFDD  120
FQREKRGEEI DHNLSPGKES CGFSCRVLFQ KELTPSDVGK LNRLVIPKKY AVGYFPPVPD  180
ESEGYANDEV NLSFYDPQKR LWKFRYCYWK SSQSFVFTRG WNQFVKEKKL KAKDKITFYY  240
HENLEIPNMG FWVIDHLCLS TNNNGASLKL GEETNDNCSL VKEGEENLKD EKTNAETIQR  300
SSVKTKGLKL FGVQIME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-92RAV family protein