PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993578.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 206aa    MW: 24132.8 Da    PI: 4.9296
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-191871356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     R +ft++q+  Le +Fe ++ p  +++ + A+klgL  rqV +WFqN+Ra+ k
  XP_024993578.1 18 GRKRFTDKQISFLEYMFETQSRPELRMKHQVANKLGLHPRQVAIWFQNKRARSK 71
                    6999************************************************99 PP
2HD-ZIP_I/II103.81.4e-3319108392
     HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ++r++++q+++LE +Fe++++ e + K+++a++Lgl+prqva+WFqn+RAR k++q+E++y++Lk+ y++l+++ e+L+ke+++L ++l+
  XP_024993578.1  19 RKRFTDKQISFLEYMFETQSRPELRMKHQVANKLGLHPRQVAIWFQNKRARSKSRQIEQEYNTLKQDYETLASKSESLKKENQALLNQLE 108
                     79************************************************************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MSVSGASIVE TRRNKNEGRK RFTDKQISFL EYMFETQSRP ELRMKHQVAN KLGLHPRQVA  60
IWFQNKRARS KSRQIEQEYN TLKQDYETLA SKSESLKKEN QALLNQLEML RDVADRHQEN  120
TRRLDSIGNS SSEDSDDRMT TSPTKNDANI TLESYSQEIS VPFYENVAYV GEESKFVVIE  180
EQLCSVNDWE ETTCGFEPDV PMWWEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.18e-34HD-ZIP family protein