PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993617.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 240aa    MW: 26784.1 Da    PI: 8.6019
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.2e-1696151256
                     T--SS--HHHHHHHHHHHHHSSS--H.HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsa.eereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk q   Lee+F+ + +++  ++++eLAk l+L+ rqV vWFqNrRa+ k
  XP_024993617.1  96 RKKLRLTKAQSGLLEEAFKLHTNLNPqKQKQELAKDLKLKPRQVEVWFQNRRARTK 151
                     678899**************99998625899***********************98 PP
2HD-ZIP_I/II1131.8e-3696186190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+k q+ lLEe F+ +++L+p ++K+ela++L+l+prqv+vWFqnrRARtk+kq+E+++++Lk+++d+lk+en+rL++eveeL++e
  XP_024993617.1  96 RKKLRLTKAQSGLLEEAFKLHTNLNPqKQKQELAKDLKLKPRQVEVWFQNRRARTKLKQTEVECDYLKKCCDTLKDENRRLRQEVEELKAE 186
                     69***********************94579**********************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGFHSFAANT QLVLELGLNS SSSASIPQNP SKISNPTTHH HHHPSLTLAL SGDSCGGSSF  60
SNASVKRERE VASEESERVN TSGTDQEDED GSVSGRKKLR LTKAQSGLLE EAFKLHTNLN  120
PQKQKQELAK DLKLKPRQVE VWFQNRRART KLKQTEVECD YLKKCCDTLK DENRRLRQEV  180
EELKAEKVST TSQTVYMQLP AATLSMCPSY EHMPNPKTPF TMPPKPHFLN PFTTSSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-61HD-ZIP family protein