PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993626.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 26656 Da PI: 8.6019

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	9e-19	96	150	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee+F+ + +++ ++++eLAk l+L+ rqV vWFqNrRa+ k XP_024993626.1 96 RKKLRLTKAQSGLLEEAFKLHTNLNPKQKQELAKDLKLKPRQVEVWFQNRRARTK 150 678899***********************************************98 PP
2	HD-ZIP_I/II	119.1	2.4e-38	96	185	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q+ lLEe F+ +++L+p++K+ela++L+l+prqv+vWFqnrRARtk+kq+E+++++Lk+++d+lk+en+rL++eveeL++e XP_024993626.1 96 RKKLRLTKAQSGLLEEAFKLHTNLNPKQKQELAKDLKLKPRQVEVWFQNRRARTKLKQTEVECDYLKKCCDTLKDENRRLRQEVEELKAE 185 69*************************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MGFHSFAANT QLVLELGLNS SSSASIPQNP SKISNPTTHH HHHPSLTLAL SGDSCGGSSF 60 SNASVKRERE VASEESERVN TSGTDQEDED GSVSGRKKLR LTKAQSGLLE EAFKLHTNLN 120 PKQKQELAKD LKLKPRQVEV WFQNRRARTK LKQTEVECDY LKKCCDTLKD ENRRLRQEVE 180 ELKAEKVSTT SQTVYMQLPA ATLSMCPSYE HMPNPKTPFT MPPKPHFLNP FTTSSSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	153	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	9e-63	HD-ZIP family protein