PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993668.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family YABBY
Protein Properties Length: 230aa    MW: 25570.9 Da    PI: 8.3114
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY221.42.7e-68241896170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes.hldes..lkeelleelkveeenlksnvekeesastsvs 97 
                      s+q+Cyv+C++C+t+lavsvP tslfk+vtvrCGhCt+ll +n+       ++++ h++++  + ++ +  l ++  n +sn   +++  ++ s
  XP_024993668.1  24 CSDQLCYVHCTHCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPLNMPGLLLPPPVNQfHFGHTnfFSPSTHTLLDDQIPNGESNFLINQNYANDFS 118
                     69****************************************99988887666654355554213444444455555555555555555555555 PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      +   +   +e+p++p ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl
  XP_024993668.1 119 LT--ARGGFRELPKPPVTNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 189
                     43..467899****999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MSISSSTTSP TVPQLFHHLP PPSCSDQLCY VHCTHCDTVL AVSVPCTSLF KTVTVRCGHC  60
TNLLPLNMPG LLLPPPVNQF HFGHTNFFSP STHTLLDDQI PNGESNFLIN QNYANDFSLT  120
ARGGFRELPK PPVTNRPPEK RQRVPSAYNR FIKEEIQRIK AGNPDISHRE AFSAAAKNWA  180
HFPHIHFGLM ADQTNAANKT SMRQQDYHTD RGFMKDGLFA ASANVGVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.19e-66YABBY family protein