PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024993751.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 262aa MW: 29768.6 Da PI: 5.9781

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024993751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ G+ +W+t ++ g++R++k+c++rw +yl XP_024993751.1 14 KGPWTAEEDKKLIKFMLSKGPCCWRTLPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.4e-17	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++ XP_024993751.1 70 LTQPEEQLVIDLHARLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 5888*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MGRQPCCDKV GVKKGPWTAE EDKKLIKFML SKGPCCWRTL PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL TQPEEQLVID LHARLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLIKMG 120 LDPVTHEPLQ NETNQSSSST KEQSPSPSEI SNSPTESTNK SGISKETCSQ ISENSMKPLF 180 ESLCDDENFL SYLLGDNEPD SLVDPLSNSK NDNCREMFAS WDECATWLMD CQDFGVEDFG 240 LDFLNEIEMI SFSNASDNHR DP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	8e-84	MYB family protein