PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993862.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 294aa    MW: 33998 Da    PI: 7.6186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-182168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W++ a+  g++Rt+k+c++rw++yl
   XP_024993862.1 21 RGPWTLEEDNLLIRYITCHGEGRWNSLAKSAGLKRTGKSCRLRWLNYL 68
                     89********************************************97 PP
2Myb_DNA-binding51.81.9e-1674117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_024993862.1  74 RGNLTPQEQILILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MRTTKKMNTS FNEEEFDQLK RGPWTLEEDN LLIRYITCHG EGRWNSLAKS AGLKRTGKSC  60
RLRWLNYLKP DTKRGNLTPQ EQILILELHS KWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ  120
KQARHLKIDS SSKRFVEELQ RFWMPRLLEK VEQTSSSSST STASTSTMET DQNKLSPGPQ  180
IEQTPFAVSS PTRPSNIEHI NSSSNFFASS SSAKMLSQLP EMSQFYADTA FYNSSLQIND  240
TYNLDISEFD MMGFGQPDDM SNLNFQVADT DWISGGDLAA DTYWNMDELW QFKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-79MYB family protein