PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024993892.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 235aa    MW: 26489.9 Da    PI: 9.0067
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024993892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.71.4e-50141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+kv++++l++ ++i+e+d+++++PwdLp     +e+e +fFs+ + ky++gkr+nr+t sgyWkatg dk+++++
  XP_024993892.1  14 LPPGFRFHPTDEELVVQYLKRKVQSHPLPA-SIIPEADVCRSDPWDLP---GDSEQERFFFSTMEIKYPNGKRSNRSTLSGYWKATGLDKQIVNS 104
                     79****************************.89***************...3467899**********************************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kktLvfy+g+ p+g+ktdW+mheyrl
  XP_024993892.1 105 rNNQVVGTKKTLVFYRGKPPTGSKTDWIMHEYRL 138
                     67888***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MDKLNFLNNG VLRLPPGFRF HPTDEELVVQ YLKRKVQSHP LPASIIPEAD VCRSDPWDLP  60
GDSEQERFFF STMEIKYPNG KRSNRSTLSG YWKATGLDKQ IVNSRNNQVV GTKKTLVFYR  120
GKPPTGSKTD WIMHEYRLVA NPTLNPSQET GKWVLCRIFL KKRGRNGEKK EEEEVKDTIE  180
KTSPIFYEFL AGPTPKDGGL NSEGALSSSG SSGVTNASHM AVPDEDEESS KLRIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-85NAC family protein