PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994052.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 228aa MW: 26270.5 Da PI: 8.612

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l v+++G ++W+ + g+ R++k+c++rw +yl XP_024994052.1 14 KGKWSEEEDNKLRAFVEKYGHRNWRQLPTLAGLSRCGKSCRLRWMNYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.4	4.4e-15	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eE++ +vd +++lG++ W+ a++++ gR+++++k++w++ XP_024994052.1 68 GNFTQEEEDVIVDIHNKLGNK-WAIMAAKLP-GRSDNDIKNYWHT 110 89*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MVRAPRFDKY GIKKGKWSEE EDNKLRAFVE KYGHRNWRQL PTLAGLSRCG KSCRLRWMNY 60 LRPNMKSGNF TQEEEDVIVD IHNKLGNKWA IMAAKLPGRS DNDIKNYWHT RLKNRVPKDR 120 THDQVFKNEQ IGSSKPNPTT GFRSNLEQLQ QQEVAVLVAV LSSKSPSSSS TTEPSPCWST 180 GSNHDDADST KIMPWFSEPS ESFWNEPFLL DDDAIISSYD NILSPMWC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	9e-52	MYB family protein