PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994158.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 449aa MW: 48082.2 Da PI: 7.5938

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.9	2.9e-12	42	67	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++++tG+C yG+rC+F+H++ XP_024994158.1 42 DEADCIYYLKTGFCGYGSRCRFNHPR 67 6799********************96 PP
2	zf-CCCH	37.2	5e-12	89	113	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_024994158.1 89 QPVCQYYMRTGMCKFGASCKYHHPR 113 689********************96 PP
3	zf-CCCH	37.8	3.3e-12	134	159	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_024994158.1 134 GEKECSYYLKTGQCKFGVTCKFHHPQ 159 7899********************97 PP
4	zf-CCCH	36.3	9.2e-12	296	322	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG C++G++C+++H++ XP_024994158.1 296 PGEPECQYFLKTGDCRFGSSCRYHHPQ 322 5799*********************97 PP
5	zf-CCCH	34	4.9e-11	344	368	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a+ G Ck+G++C+F H++ XP_024994158.1 344 APLCSHYAQKGVCKFGPSCRFDHPM 368 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MEMSQSDPVT EWNSSGGQTG LEEPMWQLGL GGGSESYPER PDEADCIYYL KTGFCGYGSR 60 CRFNHPRDRG SVAGVMRSAG GEYPERIGQP VCQYYMRTGM CKFGASCKYH HPRQGIGSSS 120 TLALNMSGYP LRPGEKECSY YLKTGQCKFG VTCKFHHPQP TAIISPPPPP PLAQAQTPES 180 LSMSSAIYPT SVASSQQYGV FSGNWPVARP SLLPGSYLPG TYGPVILPPG MVPFPGWNPY 240 QTPVSPVASP NTVGGGPLYA INPHLSPPMS SYTGSYLSMP SSTGPSKKEH AFPERPGEPE 300 CQYFLKTGDC RFGSSCRYHH PQEWNVPRTN FVLSPMGLPL RPGAPLCSHY AQKGVCKFGP 360 SCRFDHPMGT LSYSPSESSL ADMPVAPYPV GSSIGTLAPS SSSSDLRVQQ EEVISAATNK 420 EDGLSMTSMP SASVGSSLSQ SMPLSGSST

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MEMSQSDPVT EWNSSGGQTG LEEPMWQLGL GGGSESYPER PDEADCIYYL KTGFCGYGSR  60
CRFNHPRDRG SVAGVMRSAG GEYPERIGQP VCQYYMRTGM CKFGASCKYH HPRQGIGSSS  120
TLALNMSGYP LRPGEKECSY YLKTGQCKFG VTCKFHHPQP TAIISPPPPP PLAQAQTPES  180
LSMSSAIYPT SVASSQQYGV FSGNWPVARP SLLPGSYLPG TYGPVILPPG MVPFPGWNPY  240
QTPVSPVASP NTVGGGPLYA INPHLSPPMS SYTGSYLSMP SSTGPSKKEH AFPERPGEPE  300
CQYFLKTGDC RFGSSCRYHH PQEWNVPRTN FVLSPMGLPL RPGAPLCSHY AQKGVCKFGP  360
SCRFDHPMGT LSYSPSESSL ADMPVAPYPV GSSIGTLAPS SSSSDLRVQQ EEVISAATNK  420
EDGLSMTSMP SASVGSSLSQ SMPLSGSST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-148	C3H family protein