PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994159.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 384aa MW: 41222.4 Da PI: 7.5886

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	42	67	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++++tG+C yG+rC+F+H++ XP_024994159.1 42 DEADCIYYLKTGFCGYGSRCRFNHPR 67 6799********************96 PP
2	zf-CCCH	37.4	4.1e-12	89	113	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_024994159.1 89 QPVCQYYMRTGMCKFGASCKYHHPR 113 689********************96 PP
3	zf-CCCH	38	2.7e-12	134	159	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_024994159.1 134 GEKECSYYLKTGQCKFGVTCKFHHPQ 159 7899********************97 PP
4	zf-CCCH	21.6	3.8e-07	241	257	11	27
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 +tG C++G++C+++H++ XP_024994159.1 241 QTGDCRFGSSCRYHHPQ 257 89*************97 PP
5	zf-CCCH	34.3	4e-11	279	303	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a+ G Ck+G++C+F H++ XP_024994159.1 279 APLCSHYAQKGVCKFGPSCRFDHPM 303 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MEMSQSDPVT EWNSSGGQTG LEEPMWQLGL GGGSESYPER PDEADCIYYL KTGFCGYGSR 60 CRFNHPRDRG SVAGVMRSAG GEYPERIGQP VCQYYMRTGM CKFGASCKYH HPRQGIGSSS 120 TLALNMSGYP LRPGEKECSY YLKTGQCKFG VTCKFHHPQP TAIISPPPPP PLAQAQTPES 180 LSMSSAIYPT SVASSQQYGV FSGNWPVARP SLLPGSYLPG TYGPVILPPG MVPFPGWNPY 240 QTGDCRFGSS CRYHHPQEWN VPRTNFVLSP MGLPLRPGAP LCSHYAQKGV CKFGPSCRFD 300 HPMGTLSYSP SESSLADMPV APYPVGSSIG TLAPSSSSSD LRVQQEEVIS AATNKEDGLS 360 MTSMPSASVG SSLSQSMPLS GSST

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MEMSQSDPVT EWNSSGGQTG LEEPMWQLGL GGGSESYPER PDEADCIYYL KTGFCGYGSR  60
CRFNHPRDRG SVAGVMRSAG GEYPERIGQP VCQYYMRTGM CKFGASCKYH HPRQGIGSSS  120
TLALNMSGYP LRPGEKECSY YLKTGQCKFG VTCKFHHPQP TAIISPPPPP PLAQAQTPES  180
LSMSSAIYPT SVASSQQYGV FSGNWPVARP SLLPGSYLPG TYGPVILPPG MVPFPGWNPY  240
QTGDCRFGSS CRYHHPQEWN VPRTNFVLSP MGLPLRPGAP LCSHYAQKGV CKFGPSCRFD  300
HPMGTLSYSP SESSLADMPV APYPVGSSIG TLAPSSSSSD LRVQQEEVIS AATNKEDGLS  360
MTSMPSASVG SSLSQSMPLS GSST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-99	C3H family protein