PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994176.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 271aa    MW: 30267.6 Da    PI: 5.2671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd+ll d+++ +G g+W++ +++ g+ R++k+c++rw +yl
   XP_024994176.1 14 RGAWSDEEDKLLTDYIQTHGEGQWRSLPSKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding52.51.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E +++++++  +G++ W+ Ia +++ gRt++++k++w+++l
   XP_024994176.1  67 RGNFTADENDIIIRLHSVHGNR-WSFIATELP-GRTDNEIKNHWNSHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MGRAPCCSKV GLHRGAWSDE EDKLLTDYIQ THGEGQWRSL PSKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNF TADENDIIIR LHSVHGNRWS FIATELPGRT DNEIKNHWNS HLKRKEIDDG  120
GVEKEADASK NNKKPRKKKR KTDHKSTKVK SAEKSGEEPV PDQPSNSSLS SSQSASLNWG  180
KESSDNGIMS GASSSNCTID EGEGDLLASD FCWPNWTPLF DMEVAGSIEG ENDIPLELEV  240
CDLLISNNDD SQLLEKLYCE YLNLLEDGDS L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141KKPRKKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-62MYB family protein