PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994214.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 262aa MW: 27556.8 Da PI: 9.9749

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.8	4.7e-39	32	129	3	102
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa. 95 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++ ++s++nss ++a XP_024994214.1 32 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStVSVAVRNSNANSSL----SAALd 122 79******************************************************************887333333333332222....22221 PP TCP 96 kskksqk 102 +++ sq+ XP_024994214.1 123 QKSTSQH 129 2222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MSTSEGAANA LPNAGIIDTQ RHQPPGNGVL SVKKPPAKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSVAVRN SNANSSLSAA 120 LDQKSTSQHH QHLISPTPFI LGKRLRSEED GLDGGGKEDN MSSATVVSAA AGGGFWALPA 180 RTDFGQVWSF AAAPPEMVVS SPSAMASQQG RYIHNHNQQP MGEASAARVG NYLPITQGHL 240 NLLASLSGPP PQSSGGKDDD TR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	9e-57	TCP family protein