PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994223.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 259aa    MW: 29053.6 Da    PI: 7.2036
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l  +++  G  +W++ ++  g+ R++k+c++rw +yl
   XP_024994223.1 14 KGAWSQDEDNKLRAYIETCGHSNWRKLPKLAGLSRCGKSCRLRWMNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.45.2e-1668112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++T++E++  v ++++lG++ W+ Ia++++ gR+++++k++w+++l
   XP_024994223.1  68 GKFTKDEEDVVVALHNKLGNK-WSMIAARLP-GRSDNEIKNYWHTHL 112
                      89*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MVRAPCFDKH GMKKGAWSQD EDNKLRAYIE TCGHSNWRKL PKLAGLSRCG KSCRLRWMNY  60
LHPNVKHGKF TKDEEDVVVA LHNKLGNKWS MIAARLPGRS DNEIKNYWHT HLKNRAPKDQ  120
TVLQTEQDGN VEPSKGKAKA GCVVRKPSLK SQQEVDILLT ESSSSSSSSS SSYYSTISDP  180
NESSPSSLSV SDANVTPKCS DEVAGSLWID QFLWDKDHSI MLSSDKMFSP LGVGADDFIF  240
SEDNAMDDVL LWSNLDLYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-55MYB family protein