PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994309.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 256aa    MW: 29437.4 Da    PI: 4.4449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding476.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l  +v+++G  +W++ ++  g+ R++k+c++rw +yl
   XP_024994309.1 14 KGAWSEDEDNKLRAYVQRYGHWNWRLLPKFAGLSRSGKSCRLRWVNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding53.55.7e-1768112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++T+eE++ +v+++++lG++ W+  a++++ gR+++++k+rw+++l
   XP_024994309.1  68 GNFTKEEEDMIVELHNKLGNK-WSEMAAYLP-GRSDNEIKNRWHTHL 112
                      89*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MVKTPSFDKN GVKKGAWSED EDNKLRAYVQ RYGHWNWRLL PKFAGLSRSG KSCRLRWVNY  60
LRPDLKHGNF TKEEEDMIVE LHNKLGNKWS EMAAYLPGRS DNEIKNRWHT HLKKRAQKDQ  120
TELENEHIGT VEPDQTNNTE ENLVQNSDLQ LQQDIEILLA ESPLSSSTTN LSWLNGFDSA  180
GSSDDIPQLT DYAPVGDFWT DPFFSDNDSI ISSSDNLFLP SDLVYTASCQ DMIVADDEFL  240
WSSLDSYLEY NGQFIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-52MYB family protein