PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994382.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family Whirly
Protein Properties Length: 250aa    MW: 27986.9 Da    PI: 9.8008
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly219.23.8e-68732111139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s+yk+kaal+v+++ p+f  ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++++sceffhdp++++s+eG+vrk+lk
  XP_024994382.1  73 SIYKGKAALTVEPRPPEFAPLDSGAFKLTKEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLISLGARDSCEFFHDPFKGKSDEGRVRKVLK 167
                     7********************************************************************************************** PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     vePlpdGsG+f+nlsv+n+l++ +es+++Pv+kaefa+l s+++
  XP_024994382.1 168 VEPLPDGSGHFFNLSVQNKLINMDESIYIPVTKAEFAILVSAFN 211
                     ***************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MEMLNLSISS TRALQNPKPP FTLAPQISAP STIKFINPTS RKLNLKCQYS DQQQRPDVSQ  60
PRQETPKVFI GHSIYKGKAA LTVEPRPPEF APLDSGAFKL TKEGFVLLQF APAAGVRQYD  120
WSRKQVFSLS VTEIGNLISL GARDSCEFFH DPFKGKSDEG RVRKVLKVEP LPDGSGHFFN  180
LSVQNKLINM DESIYIPVTK AEFAILVSAF NFAVPYLLGW HTFANSIRPE DITRSNNANS  240
RSGADLEWNR