PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994422.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 558aa    MW: 60979.9 Da    PI: 5.1616
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.99.7e-1321865561374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cA av++++++la++l+++   la +++ pm+++aayf eALa+r++r     +k+ +p+e++    ++++     f+e++P+lkf+h
  XP_024994422.1 186 LVHTLMACAGAVHQENFQLAENLVKHAGILAVSQAGPMRKVAAYFSEALARRIYR-----FKSETPQESP---AINNILQ-MHFYEACPYLKFAH 271
                     689****************************************************.....4444444444...4555443.35************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++ ++rvH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g p s+s++ l+e g++La++A++++v+fe+++lv+++++d+e
  XP_024994422.1 272 FTANQAILEAFAFKKRVHVIDFSLNQGIQWPALLQALAVRPGGPPSFRLTGIGMPPSDSSNPLQESGWKLAQLADSIRVKFEYRPLVVESFADIE 366
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak..........l 275
                     + +L+++ gE++a+n+v++lh+ll++++++e     +L++v++++P++v+vveqea+hn+ +F+erf e+l+yysa++dsle++          +
  XP_024994422.1 367 PAMLDLRDGEVVAINSVFELHKLLARPGAVER----LLSAVRNMKPEIVTVVEQEANHNGVDFMERFNESLHYYSAVYDSLESScngggaggspV 457
                     ***************************99999....*********************************************99999999999766 PP

            GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                     +++ ++++ +++ +lg++i+nvvaceg++r+erhet+ +W+ r+++aGF++++l+++a  qa++ll+ ++ +dgy+v e++g+l+lgW++r+L++
  XP_024994422.1 458 GTT-NKDKIMSEIYLGKQICNVVACEGEDRIERHETVTQWKTRFDSAGFRSAHLGSNAFRQASMLLAIFAgGDGYKVVENDGCLMLGWHTRALIT 551
                     555.5556677788********************************************************************************* PP

            GRAS 370 vSaWr 374
                     +SaW+
  XP_024994422.1 552 TSAWK 556
                     ****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MKRNFSGGGG GSTSAAGGGF PKLRSEVTGK SKMWDEDEEQ DTGDDELLAV LGYKVKPADM  60
ADVADKIQQL EEALVNDDEL SQLASDSVHY NPSNLSTWLE TMMVELNPAT QPLVIDDSTM  120
NTVNLPPTTV ATVDPTSAFM ENLVPDDEIH PPAKKVKPLS ASASTSTSNN SNQAILVDSQ  180
NNGIRLVHTL MACAGAVHQE NFQLAENLVK HAGILAVSQA GPMRKVAAYF SEALARRIYR  240
FKSETPQESP AINNILQMHF YEACPYLKFA HFTANQAILE AFAFKKRVHV IDFSLNQGIQ  300
WPALLQALAV RPGGPPSFRL TGIGMPPSDS SNPLQESGWK LAQLADSIRV KFEYRPLVVE  360
SFADIEPAML DLRDGEVVAI NSVFELHKLL ARPGAVERLL SAVRNMKPEI VTVVEQEANH  420
NGVDFMERFN ESLHYYSAVY DSLESSCNGG GAGGSPVGTT NKDKIMSEIY LGKQICNVVA  480
CEGEDRIERH ETVTQWKTRF DSAGFRSAHL GSNAFRQASM LLAIFAGGDG YKVVENDGCL  540
MLGWHTRALI TTSAWKLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein