PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994443.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 250aa    MW: 28134.8 Da    PI: 6.4017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994443.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd+ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
   XP_024994443.1 14 RGAWSDEEDKLLTNYIQTHGEGQWRSMPSKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding48.81.7e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E e +++++  +G++ W+ Ia ++  gRt++++k++w+++l
   XP_024994443.1  67 RGNFTADENETIIRLHSIHGSR-WSFIATELA-GRTDNEIKNHWNSHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRAPCCSKV GLHRGAWSDE EDKLLTNYIQ THGEGQWRSM PSKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNF TADENETIIR LHSIHGSRWS FIATELAGRT DNEIKNHWNS HLKEKVLQPE  120
VPKRIKKPKK KVHNKSKTKV LEVAERAVEI VPDQPASSTS SLSLRKSTSF DNGASSGESS  180
SCTFEADPVT TDFRWPELFD MEGASSVDGL NMDGFDLLML KDDESEMLEK LYDECWLLLQ  240
DGDGDGDAIM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-59MYB family protein