PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994527.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 950aa MW: 106196 Da PI: 6.0358

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	169	7.2e-53	12	128	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e + rwlk+ e++ iL++fe+ +lt+e++++p+sgsl+L++rk +r+fr+DG+sw+kkkdgk E+he+LKvg+ve+l+cyYah+e+np+fq XP_024994527.1 12 VEEaQVRWLKPGEVLFILQSFEEKQLTHEPPQKPPSGSLFLFDRKALRFFRRDGHSWRKKKDGKNLGEAHERLKVGNVEALNCYYAHGEQNPNFQ 106 566699*************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+L++e+e+ivlvhy+++ XP_024994527.1 107 RRSYWMLNSEMEHIVLVHYRDT 128 *****************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 950 aa Download sequence
MTTSGYHLRY LVEEAQVRWL KPGEVLFILQ SFEEKQLTHE PPQKPPSGSL FLFDRKALRF 60 FRRDGHSWRK KKDGKNLGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNSEMEHI 120 VLVHYRDTTM HQTITFYKGR KIVGPLSVSS PGSSTPVQSP ISYASQLTRS AAASSEIGEP 180 YESTSSPSCI EVTSSLLNKD EGSSHLNIME GTEGISGSPN SEIDQALRRI EEQLSLDEDQ 240 LKDIGAFYSE NEDSYDSGLT VDEQSYNAFS GMQGHSGRLH EYQQQSQDKF TSTSQQTSFW 300 KDMLIYDGGA AGDGESQEDQ VYPGDKNGIH LPQPRDYPVE KQENCYSGDN GAKNDHLKFS 360 SYTHAKNMYG SDPDFRPATF DQEHIQMPLE SDSSLTISQE QKFTIREISP GWGYATESTK 420 VLIIGTFTCD PTKCDWTCMF GDIGVPVDII QDGVICCQAP PCLPGKVTVC ITSGNQEACS 480 EISEFEYRDK PNSYGHANSI EKESHWSLEE LLILVRLVQM LLSDQVTQKR ESTRTDLLAS 540 SMAGEDTWGQ VIEALLDGSL ASSSATDWVL EELLKDKLQQ WLSSRLQDNN APPALSRREQ 600 GIIHMISGLG FWWALKPILN SGVSINFRDI NGWTALHWAA RFGREKMVAE LLASGAFAGA 660 VTDPSNQDPT GKTPASIAFA CGHKGLAGYL SEMALTGHLS SLTLQQTELS LSSADIEAER 720 TVNSLSNTNL VMNDDHLSLK DTLAAVRNAT QAAARIQSAF RAHSFRRRQQ KESAASGSED 780 EYGIFSSDIE GLSAASKLTF RNAHDHYAAL SIQKKYRGWR GRKDFLALRQ KVVKIQAHVR 840 GHQVRKSYKV ICWAVGMVEK IILRWRRKGT GLRGYRQESP SVDEGEDEDV VKAFRKQKVD 900 VAVGEAVARV LSMVDSQPAQ QQYRRMLENH RQAKAERGGD VTNMEKDDLY

Sequence ? help Back to Top

Protein Sequence Length: 950 aa Download sequence

MTTSGYHLRY LVEEAQVRWL KPGEVLFILQ SFEEKQLTHE PPQKPPSGSL FLFDRKALRF  60
FRRDGHSWRK KKDGKNLGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNSEMEHI  120
VLVHYRDTTM HQTITFYKGR KIVGPLSVSS PGSSTPVQSP ISYASQLTRS AAASSEIGEP  180
YESTSSPSCI EVTSSLLNKD EGSSHLNIME GTEGISGSPN SEIDQALRRI EEQLSLDEDQ  240
LKDIGAFYSE NEDSYDSGLT VDEQSYNAFS GMQGHSGRLH EYQQQSQDKF TSTSQQTSFW  300
KDMLIYDGGA AGDGESQEDQ VYPGDKNGIH LPQPRDYPVE KQENCYSGDN GAKNDHLKFS  360
SYTHAKNMYG SDPDFRPATF DQEHIQMPLE SDSSLTISQE QKFTIREISP GWGYATESTK  420
VLIIGTFTCD PTKCDWTCMF GDIGVPVDII QDGVICCQAP PCLPGKVTVC ITSGNQEACS  480
EISEFEYRDK PNSYGHANSI EKESHWSLEE LLILVRLVQM LLSDQVTQKR ESTRTDLLAS  540
SMAGEDTWGQ VIEALLDGSL ASSSATDWVL EELLKDKLQQ WLSSRLQDNN APPALSRREQ  600
GIIHMISGLG FWWALKPILN SGVSINFRDI NGWTALHWAA RFGREKMVAE LLASGAFAGA  660
VTDPSNQDPT GKTPASIAFA CGHKGLAGYL SEMALTGHLS SLTLQQTELS LSSADIEAER  720
TVNSLSNTNL VMNDDHLSLK DTLAAVRNAT QAAARIQSAF RAHSFRRRQQ KESAASGSED  780
EYGIFSSDIE GLSAASKLTF RNAHDHYAAL SIQKKYRGWR GRKDFLALRQ KVVKIQAHVR  840
GHQVRKSYKV ICWAVGMVEK IILRWRRKGT GLRGYRQESP SVDEGEDEDV VKAFRKQKVD  900
VAVGEAVARV LSMVDSQPAQ QQYRRMLENH RQAKAERGGD VTNMEKDDLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein