PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994528.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 942aa MW: 105176 Da PI: 5.9136

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	169	7.1e-53	12	128	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e + rwlk+ e++ iL++fe+ +lt+e++++p+sgsl+L++rk +r+fr+DG+sw+kkkdgk E+he+LKvg+ve+l+cyYah+e+np+fq XP_024994528.1 12 VEEaQVRWLKPGEVLFILQSFEEKQLTHEPPQKPPSGSLFLFDRKALRFFRRDGHSWRKKKDGKNLGEAHERLKVGNVEALNCYYAHGEQNPNFQ 106 566699*************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+L++e+e+ivlvhy+++ XP_024994528.1 107 RRSYWMLNSEMEHIVLVHYRDT 128 *****************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence
MTTSGYHLRY LVEEAQVRWL KPGEVLFILQ SFEEKQLTHE PPQKPPSGSL FLFDRKALRF 60 FRRDGHSWRK KKDGKNLGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNSEMEHI 120 VLVHYRDTTM GRKIVGPLSV SSPGSSTPVQ SPISYASQLT RSAAASSEIG EPYESTSSPS 180 CIEVTSSLLN KDEGSSHLNI MEGTEGISGS PNSEIDQALR RIEEQLSLDE DQLKDIGAFY 240 SENEDSYDSG LTVDEQSYNA FSGMQGHSGR LHEYQQQSQD KFTSTSQQTS FWKDMLIYDG 300 GAAGDGESQE DQVYPGDKNG IHLPQPRDYP VEKQENCYSG DNGAKNDHLK FSSYTHAKNM 360 YGSDPDFRPA TFDQEHIQMP LESDSSLTIS QEQKFTIREI SPGWGYATES TKVLIIGTFT 420 CDPTKCDWTC MFGDIGVPVD IIQDGVICCQ APPCLPGKVT VCITSGNQEA CSEISEFEYR 480 DKPNSYGHAN SIEKESHWSL EELLILVRLV QMLLSDQVTQ KRESTRTDLL ASSMAGEDTW 540 GQVIEALLDG SLASSSATDW VLEELLKDKL QQWLSSRLQD NNAPPALSRR EQGIIHMISG 600 LGFWWALKPI LNSGVSINFR DINGWTALHW AARFGREKMV AELLASGAFA GAVTDPSNQD 660 PTGKTPASIA FACGHKGLAG YLSEMALTGH LSSLTLQQTE LSLSSADIEA ERTVNSLSNT 720 NLVMNDDHLS LKDTLAAVRN ATQAAARIQS AFRAHSFRRR QQKESAASGS EDEYGIFSSD 780 IEGLSAASKL TFRNAHDHYA ALSIQKKYRG WRGRKDFLAL RQKVVKIQAH VRGHQVRKSY 840 KVICWAVGMV EKIILRWRRK GTGLRGYRQE SPSVDEGEDE DVVKAFRKQK VDVAVGEAVA 900 RVLSMVDSQP AQQQYRRMLE NHRQAKAERG GDVTNMEKDD LY

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence

MTTSGYHLRY LVEEAQVRWL KPGEVLFILQ SFEEKQLTHE PPQKPPSGSL FLFDRKALRF  60
FRRDGHSWRK KKDGKNLGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNSEMEHI  120
VLVHYRDTTM GRKIVGPLSV SSPGSSTPVQ SPISYASQLT RSAAASSEIG EPYESTSSPS  180
CIEVTSSLLN KDEGSSHLNI MEGTEGISGS PNSEIDQALR RIEEQLSLDE DQLKDIGAFY  240
SENEDSYDSG LTVDEQSYNA FSGMQGHSGR LHEYQQQSQD KFTSTSQQTS FWKDMLIYDG  300
GAAGDGESQE DQVYPGDKNG IHLPQPRDYP VEKQENCYSG DNGAKNDHLK FSSYTHAKNM  360
YGSDPDFRPA TFDQEHIQMP LESDSSLTIS QEQKFTIREI SPGWGYATES TKVLIIGTFT  420
CDPTKCDWTC MFGDIGVPVD IIQDGVICCQ APPCLPGKVT VCITSGNQEA CSEISEFEYR  480
DKPNSYGHAN SIEKESHWSL EELLILVRLV QMLLSDQVTQ KRESTRTDLL ASSMAGEDTW  540
GQVIEALLDG SLASSSATDW VLEELLKDKL QQWLSSRLQD NNAPPALSRR EQGIIHMISG  600
LGFWWALKPI LNSGVSINFR DINGWTALHW AARFGREKMV AELLASGAFA GAVTDPSNQD  660
PTGKTPASIA FACGHKGLAG YLSEMALTGH LSSLTLQQTE LSLSSADIEA ERTVNSLSNT  720
NLVMNDDHLS LKDTLAAVRN ATQAAARIQS AFRAHSFRRR QQKESAASGS EDEYGIFSSD  780
IEGLSAASKL TFRNAHDHYA ALSIQKKYRG WRGRKDFLAL RQKVVKIQAH VRGHQVRKSY  840
KVICWAVGMV EKIILRWRRK GTGLRGYRQE SPSVDEGEDE DVVKAFRKQK VDVAVGEAVA  900
RVLSMVDSQP AQQQYRRMLE NHRQAKAERG GDVTNMEKDD LY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein