PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994561.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family Trihelix
Protein Properties Length: 258aa    MW: 29849.7 Da    PI: 6.6893
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994561.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.43.9e-1822112186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                     +Wt++e laLi+a+re++ +lrrg l+ ++W++v++ +          +++ qC++k+e+l++ry+++k+++ +    +  st+ yf+ ++
  XP_024994561.1  22 CWTQDEALALIQAYRERWYALRRGYLRTADWDAVAEEVgricPGAIPPKTSAQCRHKMEKLRQRYRAEKQRALSFpGGQFLSTWFYFEAMD 112
                     8*************************************77644444589**********************999855778899****9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MSATATAVSA AEKPVRRFPP PCWTQDEALA LIQAYRERWY ALRRGYLRTA DWDAVAEEVG  60
RICPGAIPPK TSAQCRHKME KLRQRYRAEK QRALSFPGGQ FLSTWFYFEA MDSMEKNGNG  120
SNPDEETQSD HDDVLGEDEV WMKKPKDRSM DFKEKLGDRI DRNSGHHYFD SENGSNEFSR  180
EKRGIKQDDD SIGQIVSSIK LLADGFVKME KMKMDMVHEI EKMRMEAEMK RNELLLESQK  240
QIVEAFVKGL AENKKQQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-40Trihelix family protein