PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994564.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 665aa MW: 73093.3 Da PI: 6.2193

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994564.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.1e-12	489	534	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_024994564.1 489 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAILYINEL 534 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence
MTDYRLHTMN HWTPEENASM MDAFITSDMT SIWGATSHTN TPTTALPPAS SSASTSANGP 60 HKIHNEFNQD TLQQRLQGLI DTARESWTYA IFWQSSVVDY TGSPVLGWGD GYYKGEVNKP 120 KTKPSETSLA EQQYRKKVLR ELNSLISGSQ APESDAVDEE VTDTEWFFLI SMTQSFVNGN 180 GLPGQAAFSN QSVWVAGRDR LMASHCERAR HGQGFGLQTI VCIPATDGVI ELGSTELIFQ 240 NSDVMKKVRL SFNFNNGPDM MQINTDQAAG GDNDPSSIWL TDPVASSTVT TEVTAIKDTV 300 DRIGSQTTNV IPSNQVPKHV PFENPSSLPE NPRSVHDRDS VQNQGFFGGR ELNFGGRNGN 360 SSYSKPESGK LLNFGESKRS STNNGGFFSG QSQFNGGAEE NNNNNNKKKR SPASCGSNED 420 GMLSFISGVL PSASTVKSGG GVLTGADSDH SDLDASVVRE VESSRVVEPE KRPRKRGRKP 480 ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNVSKMDK ASLLGDAILY INELKSKLEN 540 TQCDKEELRN QLDALKKELL NKDSRQSSSS AISLPEDMKM SGQMVDLDVD VKVIGWDAMI 600 RIQCNKKSHP AARLMAALKD LDLEVNHASV SVVNELMIQQ ATVKMGGRLF TQDQLRLALT 660 NRFSN

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence

MTDYRLHTMN HWTPEENASM MDAFITSDMT SIWGATSHTN TPTTALPPAS SSASTSANGP  60
HKIHNEFNQD TLQQRLQGLI DTARESWTYA IFWQSSVVDY TGSPVLGWGD GYYKGEVNKP  120
KTKPSETSLA EQQYRKKVLR ELNSLISGSQ APESDAVDEE VTDTEWFFLI SMTQSFVNGN  180
GLPGQAAFSN QSVWVAGRDR LMASHCERAR HGQGFGLQTI VCIPATDGVI ELGSTELIFQ  240
NSDVMKKVRL SFNFNNGPDM MQINTDQAAG GDNDPSSIWL TDPVASSTVT TEVTAIKDTV  300
DRIGSQTTNV IPSNQVPKHV PFENPSSLPE NPRSVHDRDS VQNQGFFGGR ELNFGGRNGN  360
SSYSKPESGK LLNFGESKRS STNNGGFFSG QSQFNGGAEE NNNNNNKKKR SPASCGSNED  420
GMLSFISGVL PSASTVKSGG GVLTGADSDH SDLDASVVRE VESSRVVEPE KRPRKRGRKP  480
ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNVSKMDK ASLLGDAILY INELKSKLEN  540
TQCDKEELRN QLDALKKELL NKDSRQSSSS AISLPEDMKM SGQMVDLDVD VKVIGWDAMI  600
RIQCNKKSHP AARLMAALKD LDLEVNHASV SVVNELMIQQ ATVKMGGRLF TQDQLRLALT  660
NRFSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	471	479	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein