PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994679.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 406aa    MW: 45117 Da    PI: 4.2702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19129178255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  XP_024994679.1 129 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 178
                     89*******.**********82....35*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MDSYDMLRPI KYTQHKKVTT MVAVNPSMAA KSKKPSDRQK SSFPKVVRIS MTDPDATDSS  60
SDDEDELFGR RRVKNFVNEV NIQTSCKTAV AAVGGRKKGM KTGEAALQAK QKSMKTTGAP  120
AVPAGSVRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD  180
ALTNFVTPPA KETTPEINVP STSGYESGDE SNNLPSPTSV LRFESESNSK EGLEPVKEAE  240
ECQSDNGSGQ ERSECQTVRE LSPSQHQESD SGHFGDIISD QLEMDVPFLD NLFDFQMPNP  300
VDFEDDSPFL KYSPIDDFDL PDPLQIENEA PSSEYVTDDN FATIPFDDPQ IWCTDANNNT  360
LWDEDFGICN DMMLDVTSSS ILKVDDYFQD ITGDFLPADV LMTGCF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-53ERF family protein