PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994688.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 378aa MW: 42950.4 Da PI: 9.4769

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.2e-32	205	258	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_024994688.1 205 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRT 258 9****************************************************7 PP
2	Myb_DNA-binding	48.5	2.1e-15	206	257	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWTt ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_024994688.1 206 RMRWTTTLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLSHVKSHLQMYR 257 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MELFPAQPDL SLQISPPNSK PTSKPWRTSS TATDQDHHDL DLGNLWKRAF NSQQLHQQQQ 60 QQQQQQQHQQ HGSTKRSEPS FGLSLSNQTH STTNSDLTHF HNLLSQNTNT ATNIYPYQHH 120 QNHHQGFSSE LGFLRPIRGI PVYYQNTPPN FPILAHPHQK KQPLLDSCTN STITSSLIHG 180 NNINNIVRSR FLSSRFPSKR SMRAPRMRWT TTLHARFVHA VELLGGHERA TPKSVLELMD 240 VKDLTLSHVK SHLQMYRTVK TTDRAPASSG QSDIYENGSS GDNSDDIMFD IRNPRSTELS 300 AEHGGRSSVP QEKDCQYGLW SNSSREAWLH GEHRDSEGNK PFLEKEMNSK GVNYERLSEV 360 SSSSPKKPNL EFTLGRPQ

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MELFPAQPDL SLQISPPNSK PTSKPWRTSS TATDQDHHDL DLGNLWKRAF NSQQLHQQQQ  60
QQQQQQQHQQ HGSTKRSEPS FGLSLSNQTH STTNSDLTHF HNLLSQNTNT ATNIYPYQHH  120
QNHHQGFSSE LGFLRPIRGI PVYYQNTPPN FPILAHPHQK KQPLLDSCTN STITSSLIHG  180
NNINNIVRSR FLSSRFPSKR SMRAPRMRWT TTLHARFVHA VELLGGHERA TPKSVLELMD  240
VKDLTLSHVK SHLQMYRTVK TTDRAPASSG QSDIYENGSS GDNSDDIMFD IRNPRSTELS  300
AEHGGRSSVP QEKDCQYGLW SNSSREAWLH GEHRDSEGNK PFLEKEMNSK GVNYERLSEV  360
SSSSPKKPNL EFTLGRPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	5e-90	G2-like family protein