PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994744.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 368aa MW: 39391.4 Da PI: 7.2354

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.6e-08	87	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_024994744.1 87 FKTKLCCKFRA-GTCPYITNCNFAHS 111 69*******.***********8 PP
2	zf-CCCH	18.8	2.9e-06	165	186	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+ C+yGd+C+F H+ XP_024994744.1 165 HCKKFFTEEGCPYGDNCTFLHD 186 599999999************7 PP
3	zf-CCCH	44.4	2.8e-14	248	273	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + +tG+C++G++C+FaHg XP_024994744.1 248 WKTRICNKWEQTGYCPFGSKCHFAHG 273 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MDYGRESGNN VVQIITGGIP RNGIDNWGDQ AVWATEDEYG IWDREASVDI TSNSNHNGRQ 60 SQIRSGNAQL GDVQATSRSK AIGKMFFKTK LCCKFRAGTC PYITNCNFAH SIEELRRPPP 120 NWQEIVAAHE EERGVSSQLR EEYQIPSLGS SSFTVDSQRS SKGRHCKKFF TEEGCPYGDN 180 CTFLHDEQSR TRESVAISLG PGSGGGYGGG GGGGGGASGD GGGGGGGTVA AAAASATASN 240 PTIKPSNWKT RICNKWEQTG YCPFGSKCHF AHGATELHRY GGGLVDTDAK DYVSPLDLNK 300 PGIMPSKPPA DIIVASSPSS AHTDGYHVGA PSQRLPGVIP RTGQRPFQKW KGPDKISRIY 360 GDWIDDIE

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MDYGRESGNN VVQIITGGIP RNGIDNWGDQ AVWATEDEYG IWDREASVDI TSNSNHNGRQ  60
SQIRSGNAQL GDVQATSRSK AIGKMFFKTK LCCKFRAGTC PYITNCNFAH SIEELRRPPP  120
NWQEIVAAHE EERGVSSQLR EEYQIPSLGS SSFTVDSQRS SKGRHCKKFF TEEGCPYGDN  180
CTFLHDEQSR TRESVAISLG PGSGGGYGGG GGGGGGASGD GGGGGGGTVA AAAASATASN  240
PTIKPSNWKT RICNKWEQTG YCPFGSKCHF AHGATELHRY GGGLVDTDAK DYVSPLDLNK  300
PGIMPSKPPA DIIVASSPSS AHTDGYHVGA PSQRLPGVIP RTGQRPFQKW KGPDKISRIY  360
GDWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-119	C3H family protein