PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994816.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 353aa MW: 40991.2 Da PI: 6.3836

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.6	2.2e-27	172	230	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs +prsYYrC+s+ gC+++++ve+s +dp++ + tY+ +Hnh XP_024994816.1 172 SDPWAWRKYGQKPIKGSIYPRSYYRCSSSkGCMARRQVEQSCTDPSIYILTYTADHNHA 230 699**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MADWGLQAVI RPNEYDDHLQ DHEDHHHHHH QHNHDQAFGS IDMKKEYDQA LLFCYPHLFD 60 HHHDYDPETT STTAVVGGEL DQLYKPFYPL YETNEIEFPP PPMPVVSADL QTIHHHHHHH 120 QDSDQEVQHQ EQHIRSFCES ASKPSQIAPK LKKRKNQQKR VVVQVTADGL SSDPWAWRKY 180 GQKPIKGSIY PRSYYRCSSS KGCMARRQVE QSCTDPSIYI LTYTADHNHA QPTRRNSLAG 240 ITRNRFKITP KSPTISDGCK TVTVSKDSPF HSPTTPSVSS IEDEILQQSN IKQETMFYNK 300 FDDQEHTMMT GFNDDDFMIY RDDFFEDLED LGGFKMDSSS YNCSNQQFPH VFS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MADWGLQAVI RPNEYDDHLQ DHEDHHHHHH QHNHDQAFGS IDMKKEYDQA LLFCYPHLFD  60
HHHDYDPETT STTAVVGGEL DQLYKPFYPL YETNEIEFPP PPMPVVSADL QTIHHHHHHH  120
QDSDQEVQHQ EQHIRSFCES ASKPSQIAPK LKKRKNQQKR VVVQVTADGL SSDPWAWRKY  180
GQKPIKGSIY PRSYYRCSSS KGCMARRQVE QSCTDPSIYI LTYTADHNHA QPTRRNSLAG  240
ITRNRFKITP KSPTISDGCK TVTVSKDSPF HSPTTPSVSS IEDEILQQSN IKQETMFYNK  300
FDDQEHTMMT GFNDDDFMIY RDDFFEDLED LGGFKMDSSS YNCSNQQFPH VFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	2e-37	WRKY family protein