PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994821.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 220aa MW: 24296.1 Da PI: 8.3485

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994821.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F + L H+++H XP_024994821.1 64 YTCTFCRREFQSAQALGGHMNVH 86 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MSLPLYVAPN LSFLTTTTSK VLWMWNPNPM TTNSHEEDDD SWEVKAFAED TRNVTGMTWP 60 PRSYTCTFCR REFQSAQALG GHMNVHRRDR ARLHQSQPHL KNPNLSSSSL LIPTQEVVAN 120 GGLCLLYSIP NPSTIFNPSS INSVQGSPSI SPHPNTNKFI NASVASHSFN SSVSNSSNTE 180 ASNHKSNEEV LSLYKKRRKT DSMVAGVDLE LRLGCSSLAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	199	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	5e-36	C2H2 family protein