PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994822.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 296aa MW: 32003.3 Da PI: 7.1798

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4.1e-08	12	56	4	45
S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 WT + d + +a ++ + +W+ Ia ++ g++ +++k+++ XP_024994822.1 12 WTRDQDRAFENALVAYPEEdskdRWENIATNVP-GKSVEEIKHHYE 56 ***************99**********.********96 PP
2	Myb_DNA-binding	44.4	3.8e-14	125	169	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky XP_024994822.1 125 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 169 7*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MMADESARES IWTRDQDRAF ENALVAYPEE DSKDRWENIA TNVPGKSVEE IKHHYELLVD 60 DLNRIESGIV PVPCYSGSSD DSASHGGDDG NGTSKKGGNL GHHNSESTHG GKASKSDQER 120 RKGVAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSMNRDR 180 RRSSIHDITS VNNGDTSVPQ AAITGQTNGS LAGKSSKQFA QVTADPPSYT VSMYGGTTVG 240 QPVGLPLVSA VGTPVNLPPP SHMAYGGIRS LGQVVPGAPM NAGPMTYPMS HTSSHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-109	MYB family protein