PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994825.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 213aa    MW: 23540.7 Da    PI: 6.4238
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-081256445
                     S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                     WT + d  + +a   ++ +    +W+ Ia  ++ g++ +++k+++ 
   XP_024994825.1 12 WTRDQDRAFENALVAYPEEdskdRWENIATNVP-GKSVEEIKHHYE 56
                     *****************99**************.**********96 PP
2Myb_DNA-binding45.12.3e-14125169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_024994825.1 125 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 169
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MMADESARES IWTRDQDRAF ENALVAYPEE DSKDRWENIA TNVPGKSVEE IKHHYELLVD  60
DLNRIESGIV PVPCYSGSSD DSASHGGDDG NGTSKKGGNL GHHNSESTHG GKASKSDQER  120
RKGVAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSMNRDR  180
RRSSIHDITS VNNGDTSVPQ AAITGQTNGS LAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-92MYB family protein