PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994869.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 396aa    MW: 44552.4 Da    PI: 7.118
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08144164526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C +f+r G C++Gd C FaHg
  XP_024994869.1 144 VCADFRR-GSCSRGDLCEFAHG 164
                     5999***.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MSSGSCLEQH KFHSSHHQLY HNLANNNKSI RDIDIPPRKL LGRRASAASA ETFLDNMYQQ  60
QQNESPKVLP EDTLFKRFLP YNSGVDSDDE DSDPYSGDHF RIYEFKVRKC TRSRSHDWTD  120
CPFAHPGEKA RRRCPRRYNY LGTVCADFRR GSCSRGDLCE FAHGVFECWL HPSRYRTEAC  180
KDGKNCQRKI CFFAHTPRQL RVLPPAEAAV SGKKYPSETC HCCAHCRCHS GIHHTNSPTS  240
TLNIDQLDNL SPPASPPFSP ARSGAGFSPI SRFADRMARA ESFGMTQFGN SSSIQKDSMS  300
MNEIMSNQSV LNDLMRSMEA MTVEENDQFP NVKFNGGSGC VDGGDQYPEF DHNHLSDSGH  360
SDLSGSFSMS SNSKQNLYNE NLISGPDFGW VNDLLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.16e-73C3H family protein