PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994877.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 395aa MW: 44724.5 Da PI: 8.6012

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_024994877.1 62 YVCEICNQGFQRDQNLQMHRRRH 84 9*********************9 PP
2	zf-C2H2	16.3	2.8e-05	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_024994877.1 139 WVCEKCSKGYAVQSDYKAHLKTC 161 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MLDTNHPHHH LTVATGPSSS DPFPSPDHGL SSKRKRRPAG TPDPDAEVVS LSPKTLLESD 60 RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRDSPEVKK RVFVCPEPSC LHHDPCHALG 120 DLVGIKKHFR RKHSNNKQWV CEKCSKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF 180 IEHQDACVVR HVHPDLPAFR RTCSPPTASS NSLSSETNFN ATRAFPRIQQ IQPHPELLHL 240 QAQEDTHNNL ELQLLPPSSS SLFEENNNNQ THLKLSIGSR ISFRNEEEKL KMAMAEMAFA 300 EESRQKAKRQ IEMAELEFAK AKRIRQQAQV ELERAKLQQE QVTKKVNSAI LEITCHCCKQ 360 RFQAVSNKAS TTTADETSSI GLSYMSSAVT EAEGD

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MLDTNHPHHH LTVATGPSSS DPFPSPDHGL SSKRKRRPAG TPDPDAEVVS LSPKTLLESD  60
RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRDSPEVKK RVFVCPEPSC LHHDPCHALG  120
DLVGIKKHFR RKHSNNKQWV CEKCSKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF  180
IEHQDACVVR HVHPDLPAFR RTCSPPTASS NSLSSETNFN ATRAFPRIQQ IQPHPELLHL  240
QAQEDTHNNL ELQLLPPSSS SLFEENNNNQ THLKLSIGSR ISFRNEEEKL KMAMAEMAFA  300
EESRQKAKRQ IEMAELEFAK AKRIRQQAQV ELERAKLQQE QVTKKVNSAI LEITCHCCKQ  360
RFQAVSNKAS TTTADETSSI GLSYMSSAVT EAEGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-134	C2H2 family protein