PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024994924.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 256aa MW: 29520.7 Da PI: 4.9121

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024994924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.3	1.5e-12	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed +l +++ +G +W++ + g R++k+c++rw +yl XP_024994924.1 11 KGAWSDDEDNKLRAYINIYGHWNWALLTKFAGVSRSGKSCRLRWVNYL 58 79****************99**********************97 PP
2	Myb_DNA-binding	53.3	6.5e-17	65	109	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T+ Ed ++ d++++lG++ W++Ia ++ gR+++++k+rw+++l XP_024994924.1 65 GNFTEAEDNIIMDLHNKLGNK-WSAIATNLP-GRSDNEIKNRWNTHL 109 89*****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MVKSKKNGMK KGAWSDDEDN KLRAYINIYG HWNWALLTKF AGVSRSGKSC RLRWVNYLRP 60 NIKHGNFTEA EDNIIMDLHN KLGNKWSAIA TNLPGRSDNE IKNRWNTHLK RQAQKEHIVL 120 ENQDDNETNK VNEANPQENI VETTNLKLLQ EVEILRERSS SESPSIDRLS SHSSSSWDYA 180 VSSDVTQQPL DYEPTTNFWT DPFISDDDNI ISSSDHLFTP MDLVVDYISN GYSQDMVMAN 240 EFLWSALDLC NEPFLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	8e-46	MYB family protein