PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994945.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 303aa    MW: 33817.6 Da    PI: 9.4003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.9e-07243286243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g+W+  Ed  l++a k ++++   +W++I + ++ gR+   c  r
   XP_024994945.1 243 GSWSSAEDIALLNALKAFPKDvamRWEKITAAVP-GRSKGACMKR 286
                      79********************************.****999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MEFFDEESRP RFLLQSRSIP KPTENQLPLD DLHKPTLFVS LSLSALLLTL ALFYFQSDPL  60
QSIFIWFSLS LLVGPFAPPS LTAGDIRVGL GPALQPQSPR QNQESDPPKR SRFKPKKPDQ  120
DHQEPSFNPI PSVVVKETPK PGNKTDNDSI VVEDKDWTEG DLELLKKQIA KHPVGMPGRW  180
DAVAEAFSGR HKVENVVKMA KSMGERKMGD SDSFSRFLKD RKAVDKRVDE VIENEREMAS  240
GGGSWSSAED IALLNALKAF PKDVAMRWEK ITAAVPGRSK GACMKRVADL KKDFRSSKTS  300
SEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.17e-77MYB_related family protein