PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024994993.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 234aa    MW: 26753.5 Da    PI: 8.6817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024994993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.3e-082472554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     ++ E++RR+++N  ++ L +l+P+ +   +++    ++ + +A++YI+ L
  XP_024994993.1 24 RKITEKNRRNNMNFLYSHLFSLIPPhLI--SKGGAQVSDRVDRAIDYIQTL 72
                    6899*********************773..44448888***********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MERKNKCSGS GSGSGSLKMK KPERKITEKN RRNNMNFLYS HLFSLIPPHL ISKGGAQVSD  60
RVDRAIDYIQ TLKDSLEMNK KKKEQLLSKK RSFQHTKTNI VRQSLDVQIQ EMSPDLDAVL  120
VTGLKNHSDF CDVVQLLERY STEVALANFS SSGHSIFHLR HKKMEADEMS KRIKNLIEGS  180
SKMKELELEL ELGNDDIDIN GSSSSSSNIS KWDFDIQSTL WEWELEMLPM NMLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-11bHLH family protein