PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995021.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 476aa MW: 53827.6 Da PI: 7.9095

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.5	1.5e-13	28	72	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + + +G+++W+ Ia+++ ++t qc+ rw++yl XP_024995021.1 28 SWSKEEDDILRKQIGIHGTNNWAIIASKFE-KKTTRQCRRRWFTYL 72 6***************************.9**********97 PP
2	Myb_DNA-binding	43.6	6.8e-14	78	119	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g WT+eEd +l +a k +G++ W+ Ia+ + gRt++ +k+r+ XP_024995021.1 78 KGGWTPEEDIILCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRF 119 688*****************.*****.********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MKKKACDGNN SDKGGGDDLK QKERHLVSWS KEEDDILRKQ IGIHGTNNWA IIASKFEKKT 60 TRQCRRRWFT YLNSDFKKGG WTPEEDIILC EAQKIFGNRW TEIAKVVSGR TDNAVKNRFS 120 ILCKRKAKHE ASSNENNAAE VNANNKRTMF DNREDTEGIL ETSMHPMKLR RKHIAAATED 180 CNLVGLVGDS RTVDQKRRPP FVVLVQNCDN TNTSTAQIHA SSKKALIDAS SGIRVEGTTF 240 KKDDPKIVAL MQQAELLNSL ASEVNIEKTD QSFKSAWKAV QDFLNHTKES DKLRFHISDM 300 EFQLENFKIL VEDIRSCRDD NQRFWSQADV YQGSPDSSEY GTMSSIPSHI NEKTKMAEDL 360 CKVEPRPSRP IHPNNLVDDR NIEEYDAAAH QDIIPSSSKL NDDVRGVCPL SNSEFSSPLQ 420 VTPLFRSMAE GILSPQFSES EKHFLLKTLG MEPTTPNPTA RTSQSPPCKR ALLHCL

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MKKKACDGNN SDKGGGDDLK QKERHLVSWS KEEDDILRKQ IGIHGTNNWA IIASKFEKKT  60
TRQCRRRWFT YLNSDFKKGG WTPEEDIILC EAQKIFGNRW TEIAKVVSGR TDNAVKNRFS  120
ILCKRKAKHE ASSNENNAAE VNANNKRTMF DNREDTEGIL ETSMHPMKLR RKHIAAATED  180
CNLVGLVGDS RTVDQKRRPP FVVLVQNCDN TNTSTAQIHA SSKKALIDAS SGIRVEGTTF  240
KKDDPKIVAL MQQAELLNSL ASEVNIEKTD QSFKSAWKAV QDFLNHTKES DKLRFHISDM  300
EFQLENFKIL VEDIRSCRDD NQRFWSQADV YQGSPDSSEY GTMSSIPSHI NEKTKMAEDL  360
CKVEPRPSRP IHPNNLVDDR NIEEYDAAAH QDIIPSSSKL NDDVRGVCPL SNSEFSSPLQ  420
VTPLFRSMAE GILSPQFSES EKHFLLKTLG MEPTTPNPTA RTSQSPPCKR ALLHCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-141	MYB family protein