PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995049.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 90aa    MW: 10050.4 Da    PI: 9.2854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-1020571554
                    HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    ++ + +++L++l+P+   ++s K+s + +L+++++YI+sL
  XP_024995049.1 20 QMTDLISKLQRLIPNH--TNSSKVSASKVLQETCNYIRSL 57
                    6899***********6..4*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    
MSSRRSRSKK SGESMITDTQ MTDLISKLQR LIPNHTNSSK VSASKVLQET CNYIRSLHRE  60
VDDLSEKLSE LLESTDANSA QAAIIRSLIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-25bHLH family protein