PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995145.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 190aa    MW: 20109 Da    PI: 5.2458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.2e-153683355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    y+G+r ++  g+Wv+eIr+p     +  +r++lg++ t+e+Aa+a++ a+++l+g
  XP_024995145.1 36 YHGIR-CR-AGKWVSEIREP-----NkpTRIWLGTYPTPEMAAAAYDVAALALKG 83
                    89998.55.7*********8.....448************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MANRRRRNSP AFRQSQDEDN SNRTAAGSSS SRHPAYHGIR CRAGKWVSEI REPNKPTRIW  60
LGTYPTPEMA AAAYDVAALA LKGTYAVLNF PDSILSSTLP ECPTADDIRA AAARAAAARA  120
PTNETGGGSG SSTGVGGNHP GGYMDDEAVF GMPNMLSDMA EGMLLTPPRD NSNPPDDGDD  180
YSGGGNLWSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-28ERF family protein