PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995159.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARR-B

Protein Properties

Length: 608aa MW: 66656.6 Da PI: 6.4212

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.7	1.1e-27	226	279	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+ W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+g+t+e+v+SHLQkYR+ XP_024995159.1 226 KPRVAWSMELHQQFVAAVNQL-GFDKAVPKKILDLMNVPGITRENVASHLQKYRI 279 79*****************.******************************7 PP
2	Myb_DNA-binding	39.5	1.3e-12	228	278	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r +W+ e+++++v av+qlG + +k+I m+ g t++++ s++qky+ XP_024995159.1 228 RVAWSMELHQQFVAAVNQLGFDkaVPKKILDLMNvPGITRENVASHLQKYR 278 679***********************************************7 PP
3	Response_reg	76	1.3e-25	45	153	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+ +y e++ + +e al ll+e++ +D+++ D+ mp+mdG++ll +i e +lp+i+++a ++++ + + + G XP_024995159.1 45 VLVVDDDPTCLMILEKMLRTCKY-EATKCNRAEVALSLLRENKngFDVVISDVHMPDMDGFRLLVHIGLEM-DLPVIMMSADDSKSVVMKGVTHG 137 89*******************.***********999999******************6654.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l++ XP_024995159.1 138 ACDYLIKPVRMEALRN 153 **********9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MNLGSQVLVS KQSMMPSSSG ASWNSVGAGD GDGNSSDQFP AGLRVLVVDD DPTCLMILEK 60 MLRTCKYEAT KCNRAEVALS LLRENKNGFD VVISDVHMPD MDGFRLLVHI GLEMDLPVIM 120 MSADDSKSVV MKGVTHGACD YLIKPVRMEA LRNIWQHVVR KRKHEWKDIE PSVSLDEGNQ 180 QQKKQPEDPD CTSSANEGHN CKTAKRRKDD EDEAEEKEHS SSSSKKPRVA WSMELHQQFV 240 AAVNQLGFDK AVPKKILDLM NVPGITRENV ASHLQKYRIY LRKLGGPQQS GTINPSFMGN 300 LDAGYGSLNE LDLQALAASG QLNQLPAQSL ASLQAVALGR SANPRSISVP LIDQRNVFSF 360 ENPKLRYGQV QNRHGYNSNI SKQMNLLHGV PTTMEPKQLA GFRHSFNGMN SQGLIPMTGQ 420 SQTHDHLSRR PVLSNGMVGN TRDTATAVYN SAASQVASLV QSTSLASSNS FPLRGSSGIP 480 SIMSTSTLQR DGNIENVQNR PQNWGLQGVD LTPNPSQHTN NMQGGMNVLH HNYISDQNIG 540 GSKVIISSGE GSWTHITDDP SPVNQPFGTE EYSQEDLLTP FLTQQEGVGQ AENDFGFDWY 600 SSSDNLPV

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MNLGSQVLVS KQSMMPSSSG ASWNSVGAGD GDGNSSDQFP AGLRVLVVDD DPTCLMILEK  60
MLRTCKYEAT KCNRAEVALS LLRENKNGFD VVISDVHMPD MDGFRLLVHI GLEMDLPVIM  120
MSADDSKSVV MKGVTHGACD YLIKPVRMEA LRNIWQHVVR KRKHEWKDIE PSVSLDEGNQ  180
QQKKQPEDPD CTSSANEGHN CKTAKRRKDD EDEAEEKEHS SSSSKKPRVA WSMELHQQFV  240
AAVNQLGFDK AVPKKILDLM NVPGITRENV ASHLQKYRIY LRKLGGPQQS GTINPSFMGN  300
LDAGYGSLNE LDLQALAASG QLNQLPAQSL ASLQAVALGR SANPRSISVP LIDQRNVFSF  360
ENPKLRYGQV QNRHGYNSNI SKQMNLLHGV PTTMEPKQLA GFRHSFNGMN SQGLIPMTGQ  420
SQTHDHLSRR PVLSNGMVGN TRDTATAVYN SAASQVASLV QSTSLASSNS FPLRGSSGIP  480
SIMSTSTLQR DGNIENVQNR PQNWGLQGVD LTPNPSQHTN NMQGGMNVLH HNYISDQNIG  540
GSKVIISSGE GSWTHITDDP SPVNQPFGTE EYSQEDLLTP FLTQQEGVGQ AENDFGFDWY  600
SSSDNLPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.2	1e-145	ARR-B family protein