PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995186.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 221aa MW: 25157.1 Da PI: 7.7752

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.3e-31	142	200	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+ XP_024995186.1 142 LDDGYKWRKYGQKSVKNSHHPRSYYRCTHHTCNVKKQIQRLSKDNTIVVTTYEGIHNHP 200 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MERDDHEHAS HAGAHDDHQA DPMNNSNNMN PFMLDYTTTL PLIDNPFHSS SSDPLLLPQP 60 CLPLMPHNYV DNNSINLESS NVDWVSLLSG FMNNGEGSAM GDHESSSSRR HNGMNGKGMK 120 SRGKKVTPSR VAFHTRSSED ILDDGYKWRK YGQKSVKNSH HPRSYYRCTH HTCNVKKQIQ 180 RLSKDNTIVV TTYEGIHNHP CEKLMETLTP LLKQLQFLSR F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	5e-58	WRKY family protein