PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995281.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 317aa    MW: 33975.3 Da    PI: 7.4528
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995281.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.52.4e-3840141289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     + k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s + s+s+ s+g       
  XP_024995281.1  40 PQKRGSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRGSGSTISAGptsylrn 134
                     568899***************************************************************88865555555554333334445555 PP

             TCP  89 ......k 89 
                           +
  XP_024995281.1 135 gfsfitD 141
                     5555551 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MEPQDQLNYL LLQTHSGVVT IGEEDATVDL QPLLPSPKPP QKRGSTKDRH TKVDGRGRRI  60
RMPAICAARV FQLTRELGHK SDGETIEWLL QQAEPSVIAA TGTGTIPANF TSLNISLRGS  120
GSTISAGPTS YLRNGFSFIT DQPTAHLMDC PTSARKHDEL CVDPLGIDQS NYMTQSSNPA  180
GNDQIPARAV YLNPNSSSTS TRSTRVFSGD STWNFPSTSN KSSKYNNNSN IYRGCSRPSN  240
NGSGGGDAGG GVHFMNFGTQ TALFNGQQFS GGAMTADGML AALSSIRTNF GGGSDHLSTM  300
NHGDHHQQHE TSSHHHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-47TCP family protein