PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995318.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 258aa    MW: 29169 Da    PI: 10.1516
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.9e-181050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  XP_024995318.1 10 FITNDSARKATFKKRKKGLMKKVNELSTLCGIDACAIIYSP 50
                    89**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVNELSTLCG IDACAIIYSP YEAQPEVWPN  60
NIGVQRVLAQ FKRMPEMEQS KKMVNQESFI RQRITKANEQ LKKQIKENRE KEMTEVMYQC  120
LTGKGSISNL ILPDLNDLGG LVDQTLKDIC RRMESLKKAV PGKAAAAPPP LPPRPQTIVS  180
GNSLIAANEM MTRGVAMHAL EKRPMVDNLS AMEGMQRPQW FTDWINNPSE HNLGLGPGYE  240
MAPFVDNPNP IWPNPYFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-66M-type_MADS family protein