PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995319.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

M-type_MADS

Protein Properties

Length: 249aa MW: 27567.4 Da PI: 4.7875

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.5	4.9e-15	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i ++ r+++f kR++ ++KK +EL++LC+++++ i++s+ XP_024995319.1 11 ITDEYARKTSFMKRKTSVMKKLNELCTLCGVDACAIMYSEY 51 889999*********************************84 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MPRSKVKLEY ITDEYARKTS FMKRKTSVMK KLNELCTLCG VDACAIMYSE YDPEVEVWPS 60 NVGAQFVLDQ FMMMPEVEQS KKMVNQDSYI RKRISKAKEQ LDKHMKENRE KKIGIVISEC 120 LSGEASVVSL TLMDLKDMVF LIDHYVSEID ARLEFLKGGG PPPPPQLVQP QANVGGSSTD 180 NHMVEGGVPA DGYVPVVENA GALDGIIPNT EWFTDWVDGL GFGQGDHMTS NSPAADPNPP 240 WSSPSSKTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	4e-44	M-type_MADS family protein