PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995333.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family SBP
Protein Properties Length: 166aa    MW: 18028.2 Da    PI: 9.1118
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.33.9e-4269145177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cq+e+C+adl+eak+yhrrh+vCe h+ka++v+v+g  qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk++
  XP_024995333.1  69 CCQAEKCTADLTEAKQYHRRHRVCELHAKAQSVIVAGSPQRFCQQCSRFHELSEFDDAKRSCRRRLAGHNERRRKSS 145
                     6**************************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
METEITKASC TQKVDMKKGL VSGHDHGHGD GLFGCGGGDN DSGGSFDGNV KKKKGSHGGG  60
GGSSSGTRCC QAEKCTADLT EAKQYHRRHR VCELHAKAQS VIVAGSPQRF CQQCSRFHEL  120
SEFDDAKRSC RRRLAGHNER RRKSSIEFKG TGKELVCKGR FEGCHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.16e-41SBP family protein