PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995382.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 263aa MW: 29116.9 Da PI: 7.7689

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3.1e-05	6	26	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k+Fs+ L H+r+H XP_024995382.1 6 CKICDKVFSNGRALGGHMRSH 26 ********************9 PP
2	zf-C2H2	11.6	0.00087	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F + L H +H XP_024995382.1 129 YQCETCDKVFDSFQALGGHKTSH 151 9*********9988887777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MEGRMCKICD KVFSNGRALG GHMRSHLVTL PLPWKKPIQL QLIQEDRESE TEVTRKTNPT 60 RKRSKRARVT PLVKEVPSMS SELEPVMSSV SDQISAEEDV ALCLMMLSRD VWSFINLDES 120 SRGQKRSKYQ CETCDKVFDS FQALGGHKTS HRKIENDFTG VGNKSKKNVV QDDGKSHECP 180 FCYRVFGSGQ ALGGHKRSHV SGSSTTATDA LVCKVDGSVN LVHSTKAQGN LVIIDLNLPA 240 PTEDEENSSA VSDAEFYQSP LQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	1e-53	C2H2 family protein