PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995423.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 312aa    MW: 34064.3 Da    PI: 6.2418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05104126123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++ Fs++  L  H++ H
  XP_024995423.1 104 FSCNYCKREFSTSQALGGHQNAH 126
                     89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MEEEHKSEPC PSEASSISAE GESLKNKTLD SKALAEGSSD IQLNRRVGNQ SSSRAFLDIK  60
FSNTEDKRLE LNLFNPSKVA AEGATSSQVS ESSKETTREK SRVFSCNYCK REFSTSQALG  120
GHQNAHKQER QIAKRRQMEV PPYGHLGPPP PHYGNFTYYP SFPNLTSASI SSNRSSLGIR  180
NEPFIQRSPS WSTSQFNYRY ASVGHHDQFT TGLPYFDRPK MLEGFQGNIT NNSDCYGSPA  240
VATASSSFKF EGVPGAAHDF FGPSSGNGNP TPALENGIEG EISANNLLAL GVVHPENDQD  300
GSTVDLDLNL KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.19e-15C2H2 family protein