PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995440.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family AP2
Protein Properties Length: 467aa    MW: 53060.4 Da    PI: 6.943
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-1977128155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr+++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+ + +g
  XP_024995440.1  77 CSYRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEEAALAYDQAAYAVRG 128
                     67********.**********44465..**********************99887 PP
2AP261.61.7e-19322373155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr+++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+ + +g
  XP_024995440.1 322 CSYRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEEAALAYDQAAFSVRG 373
                     67********.**********44465..**********************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    
MDPSFSPETS FSSPEYSSPD FFPNYPSTNH HFLPFNENDS EEMLLFGIIA DTVAHHHHQP  60
STPTNHIKED EILEKDCSYR GVRRRPWGKY AAEIRDSTRN GVRVWLGTFD TAEEAALAYD  120
QAAYAVRGSA AVLNFSEDVV YESLRKMDYK YEEGSSPVLA LKKKHTLKRK STMKKKKKQK  180
IEKEAKVGNV VVLVDLGREY LEELLGLSES CSSSSHSCHI HIHIHIHIHI HIYTITLSHQ  240
KSNMINSMFY HYSSPDFSSN SPEYSSSSSQ PNYPPTDHHY LPFNENDSQE MLLLGVIADA  300
QPPHTTNHPE EEEECFKPEK ECSYRGVRRR PWGKYAAEIR DSTRNGVRVW LGTFDTAEEA  360
ALAYDQAAFS VRGSAAVLNF SEELVYASLR KMDYKYEEGS SPVLALKKKH TMKRKSTMMK  420
KKKKKEEAKV KNVVVLEDLG REYLEELLGL SESGSGSGSG SSSSFRY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162178KKKHTLKRKSTMKKKKK
2407423KKKHTLKRKSTMKKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-40ERF family protein