PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995473.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 477aa MW: 53316.9 Da PI: 9.2583

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.7e-16	55	98	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd l +vk++ g++Wk+Ia+ ++ gR++ qc +rwqk+l XP_024995473.1 55 WTDEEDTMLTGVVKKYNGRNWKKIAESIP-GRSDVQCLHRWQKVL 98 ***************************.**********986 PP
2	Myb_DNA-binding	60	5.2e-19	104	150	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G + W++Ia+++ gR +kqc++rw+++l XP_024995473.1 104 KGPWTKEEDDRIKELVEKHGCKKWSLIAKHLA-GRIGKQCRERWHNHL 150 79****************************.***********97 PP
3	Myb_DNA-binding	54.1	3.7e-17	156	199	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT+eE+ l+ +++ +G++ W+ Iar ++ gRt++ +k++w++ XP_024995473.1 156 KEAWTEEEESTLAYYHQIYGNR-WAEIARFLP-GRTDNAIKNHWNS 199 579*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MAGGKEEPHT FDLKKEVGFS SCSSISDSSC DANTPRSHYN RGSSCQTKRS SQAGWTDEED 60 TMLTGVVKKY NGRNWKKIAE SIPGRSDVQC LHRWQKVLNP ELVKGPWTKE EDDRIKELVE 120 KHGCKKWSLI AKHLAGRIGK QCRERWHNHL DPAIRKEAWT EEEESTLAYY HQIYGNRWAE 180 IARFLPGRTD NAIKNHWNSS KRRLDLNIPP VFPRRTSSPE HTEVKKGGTG TPLVEQNADD 240 KKLLNVSNTC STNLALGNRK FDITDEDCMG FTRYAKIRKV EPSIPESPKR LAVDSVKDLK 300 LGISPDTSFL SLSTFGTPSY GSLCYQPPQL KNLAISLENS GSPSSANSSM QLNGQFSCST 360 PPHLALSISV NSSSPESILR NSAMSYKNTP SIIRKRTPRS VNCSSPSTSG HDCSKNVKTS 420 ESEITQRGPD SWLHRSQPSL GRRLDYMFDS EWDPTIVRCC TPGSVTRSPK ANVMLTP

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MAGGKEEPHT FDLKKEVGFS SCSSISDSSC DANTPRSHYN RGSSCQTKRS SQAGWTDEED  60
TMLTGVVKKY NGRNWKKIAE SIPGRSDVQC LHRWQKVLNP ELVKGPWTKE EDDRIKELVE  120
KHGCKKWSLI AKHLAGRIGK QCRERWHNHL DPAIRKEAWT EEEESTLAYY HQIYGNRWAE  180
IARFLPGRTD NAIKNHWNSS KRRLDLNIPP VFPRRTSSPE HTEVKKGGTG TPLVEQNADD  240
KKLLNVSNTC STNLALGNRK FDITDEDCMG FTRYAKIRKV EPSIPESPKR LAVDSVKDLK  300
LGISPDTSFL SLSTFGTPSY GSLCYQPPQL KNLAISLENS GSPSSANSSM QLNGQFSCST  360
PPHLALSISV NSSSPESILR NSAMSYKNTP SIIRKRTPRS VNCSSPSTSG HDCSKNVKTS  420
ESEITQRGPD SWLHRSQPSL GRRLDYMFDS EWDPTIVRCC TPGSVTRSPK ANVMLTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	2e-79	MYB family protein