PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995477.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 27988.8 Da PI: 8.4616

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_024995477.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	96.9	3.2e-32	81	173	6	98
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++s++ea + s+qqe+ kLk ++e Lqr+qR+llGedL++L+ keL++Le+qL++slk+iRs +++l+l+ + +lqkke++l+e+n++L+++l XP_024995477.1 81 NVSAKEALELSSQQEYLKLKTRYEALQRSQRNLLGEDLGPLNCKELESLERQLDSSLKHIRSARTQLMLDTLTDLQKKEHALNEANRTLKQRL 173 555677777899******************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPES NVSAKEALEL SSQQEYLKLK TRYEALQRSQ RNLLGEDLGP 120 LNCKELESLE RQLDSSLKHI RSARTQLMLD TLTDLQKKEH ALNEANRTLK QRLIEGNQVH 180 WYQQQEVCYD NRQPAPPHQT DHEAIFHPLD CGPTLQMGYQ TDPLTAAGGG AGPSMNNYMQ 240 GWLPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-112	MIKC_MADS family protein